VHL vitasora health limited

article on viral load

  1. 631 Posts.
    lightbulb Created with Sketch. 17
    interesting HIV & AIDS - Viral Load and the PCRVIRUSMYTH HOMEPAGE




    VIRAL LOAD AND THE PCR
    Why they can't be used to prove HIV infection
    By Christine Johnson
    Continuum Nov. 2001

    "Biotechnology's version of the Xerox machine" -- that's what Forbes
    magazine called the polymerase chain reaction (PCR). This revolutionary
    technique enables a scientist to take a sample containing a minute
    amount of DNA and replicate that DNA sequence until there are a million
    copies instead of just one or two.
    Kary Mullis, inventor of PCR, won a 1993 Nobel prize for his
    billion-dollar invention, which has become indispensable to any genetics
    lab. It is ironic that one of the first applications of PCR was to
    detect HIV, considering that Mullis himself doesn't believe his
    invention is capable of this. Mullis states the problem is PCR is too
    efficient -- it will amplify whatever DNA is in the sample, regardless
    of whether that DNA belongs to HIV or a contaminant. And how do you
    decide which part of the amplified material could be HIV and which part
    the contaminant(s), if you couldn't detect HIV in the sample without
    using PCR?
    One of the main arguments against the HIV/AIDS hypothesis is that, when
    employing traditional methods of virus detection, HIV has never been
    inferred in significant amounts in people with AIDS. Virus culture, for
    instance, has been adequate to find other viruses, but not HIV. Why not?
    When virus culture is employed to detect HIV, HIV is never seen or even
    looked for in the cultures. Its presence is measured by very indirect
    methods: assays for detection of reverse transcriptase or a p24 protein,
    neither of which is specific for HIV. Indirect methods would not be
    necessary if a significant amount of HIV were there to begin with.
    In other words, if a meaningful amount of HIV were present, the
    time-honoured laboratory techniques should be able to find it. They
    can't. Now we need not only PCR, but continuous modifications and
    improvements on PCR, in order to try to find HIV.
    This is how the idea of "viral load" came about, inspired by two spates
    of scientific papers that claimed HIV is busily replicating by the
    billions: initially, papers claiming HIV was "hiding in the lymph
    nodes," (1,2) and more recently, the Ho and Wei papers. (3,4) The latter
    studies attempted to measure "viral load" at a given point, after which
    "antiviral" drugs were administered to the patient. The drugs were
    supposed to prevent replication of any new HIV, and the viral load would
    decrease accordingly. However, within a few days, the remaining virus
    would mutate into a form resistant to the drugs, and in a few weeks the
    viral load would return to its pre-treatment levels. Applying a
    mathematical formula to this dynamic, the rate at which the virus
    replicates was allegedly determined.
    Hence was born what I call "Dr. Ho's kitchen sink theory". According to
    Ho, billions of copies of HIV are being made every day, which infect
    billions of T4-cells. These T-cells are destroyed not by HIV, but by the
    immune system. They are replenished every day, but over the years, the
    immune system loses ground and HIV finally wins. This process was
    likened to a sink with the drain open, the water pouring in from a tap
    (new T-cells being made) at a slightly lower rate than it drained away
    (infected T-cells being destroyed).
    It is most important to note that the viral load studies all rely
    completely on PCR and related techniques. This article will discredit
    PCR as an accurate method of determining HIV infection, which will in
    turn cast doubt on any conclusions about HIV that have been made based
    on PCR techniques.
    Some Basics On DNA
    PCR takes advantage of certain fundamental properties of DNA. DNA (as
    well as RNA) is a nucleic acid, and nucleic acids are composed of
    nucleotide "building blocks". DNA exists as two complementary strands
    arranged in a double helix formation (two intertwining spirals). These
    strands are made up of many nucleotides hooked together to form a long
    chain of DNA.
    The nucleotide molecule has three different parts: the phosphate and the
    sugar (which form a backbone or a ribbon-like structure), and the base.
    There are four types of bases: A, T, C, and G (adenine, thymine,
    cytosine, and guanine). These bases are attached to the backbone, which
    is wound in the familiar double helix.
    The bases on one strand bind to the bases on the other strand, and this
    gives DNA its stable double helix structure. (Think of the two strands
    as forming a zipped-up zipper.) The distinct nature of an organism's DNA
    code depends on the order, or sequence, of the bases along the DNA
    chain.
    There are special rules about how bases form chemical bonds with other
    bases: an A will only bind to a T, and a C will only bind to a G. A base
    on one strand binding to a base on the other strand is called a
    "complementary base pair". This rule of complementary base pairing is
    what gives DNA its ability to replicate itself exactly.
    Each time a cell divides, it has to make a copy of its DNA for the new
    cell. The DNA double-strand first "unzips" itself into two separate
    strands. Each single strand serves as a template, or pattern, from which
    to make a new copy of its complementary strand. (So, strand #1 serves as
    a pattern to make a new copy of strand #2, and vice versa.) The single
    strand then incorporates new nucleotide building blocks from the
    surrounding medium according to the rule of complementary base pairing.
    In other words, an available A on the single strand will grab onto a T
    nucleotide, a C will grab a G, and so on until the entire opposite
    strand is duplicated. At the end of this process, the two original
    strands zip themselves up again, and the two copied strands serve as DNA
    for a new cell.
    How PCR Works
    The theory of HIV says it, like other suggested retroviruses, contains
    RNA but no DNA: when HIV is said to infect a cell, the reverse
    transcriptase enzyme is thought to transform the RNA into complementary
    DNA, which is then inserted into the host cell's DNA.
    Therefore, if PCR is used to analyse human tissue for the presence of
    HIV, it would be looking for only a short segment out of the entire
    cellular DNA strand. This short segment represents the genetic material
    proposed for HIV, that in theory has been incorporated into the DNA of
    the cell. (Viral load studies try to look for cell-free HIV. Even here,
    PCR is only looking for part of HlV's entire proposed genetic package,
    or genome, not an entire virus.)
    PCR works in the following fashion:
    Step 1: Heat the template. A long piece of DNA containing the smaller
    fragment to be copied is heated. The two strands can be "melted" apart
    at elevated temperatures, and will slowly come back together upon
    cooling ("annealing"). The two separated strands are complementary to
    each other. They serve as templates for the new strands.
    Step 2: Add the primers. Something called a primer is necessary for the
    next step. Primers are nucleotides that form a short sequence of new
    strand. Primers are designed to be complementary to a known sequence
    which is part of a larger sequence, and thus where the primers will bind
    (or hybridise) is known.
    The primers attach to each end of the DNA segment that is to be copied
    (the segment that represents HIV's proposed genetic material). The
    primers serve two purposes: a) to mark each end of the targeted segment
    so only that segment will be amplified, and not the entire strand, and
    b) to get the duplication process started. The new strands are built
    block by block by the action of an enzyme called polymerase. The
    polymerase builds a new DNA strand alongside an existing strand. The
    polymerase will not work unless the old strand (the template) already
    has on it a few nucleotides forming a short sequence of new strand (the
    primer). (If you ever see a reference to "template-primers," this is
    what they're talking about.)
    In other words, the polymerase can only form a new strand if the new
    strand has already partially been formed. In nature, when your own DNA
    is duplicating itself, other enzymes called DNA primases build the
    primer onto the old strand.
    Once the polymerase gets going, it crawls along the single DNA strand
    (the template) adding to it the nucleotide building blocks one by one.
    The primer ends up being part of the newly-made strand.
    In nature, polymerases pull the DNA strands apart while they build the
    new DNA strand. This is how duplicate copies of DNA are made so that
    cells like blood and skin cells can divide into two new cells, a process
    essential for life.
    Step 3: Amplify. Once again, after melting and then annealing the
    primers, the polymerase enzyme copies the DNA beginning at the primer,
    making a new copy of each target segment. This process is repeated for
    as many as 30-40 rounds. During each cycle, the amount of segments
    doubles, so two segments become four, four become eight, then 16, etc.
    By the end of the process, approximately a million copies of the
    original segment have been made. Now you have a whole lot of DNA, where
    originally you had only a minuscule amount. This is why PCR is referred
    to as being able to find a "needle in a haystack."
    Obviously, it is necessary for the primers to be specific to HIV.
    Whether the PCR will make an amplified product (a "positive PCR")
    depends on whether the primers you add match part of the DNA in the
    target specimen.
    Below, we will see that the specificity of the primers for HIV is in
    doubt. Even if the primers were specific to HIV, if similar sequences
    are present in the target, the primers, under lax conditions, will form
    hybrids with (or bind) related sequences that are less than a perfect
    match. They will then prime the polymerase, which starts the
    amplification procedure, even though no HIV was present to begin with.
    Using PCR To Find HIV
    A problem for the HIV hypothesis was that, even with the use of standard
    PCR, researchers could not find much, if any, HIV in persons with AIDS
    diagnoses. To resolve this paradox, the authors of the new "viral load"
    papers came up with two modifications of PCR, which they claimed were
    much more efficient at finding HIV. These were the QC-PCR and the
    branched DNA test (bDNA). And suddenly -- eureka! -- billions of copies
    of what was believed to be HIV were found. The contradiction here seems
    to have escaped the authors of these papers: Why would such powerful new
    tests be needed at all to find a microbe that is present in the
    billions? Traditional methods should suffice.
    QC-PCR
    This is the test used in the above-mentioned papers by Anthony Fauci
    (Pantaleo) and Ashley Haase (Embretson), which claimed HIV was "hiding
    in the Iymph nodes." These papers were accepted as fact, even though
    QC-PCR was, and remains, an unvalidated technique.
    Mark Craddock, of the University of Sydney (Australia), explained the
    principles of and problems with QC-PCR as follows: (8)
    "PCR mass produces fragments of DNA. You start with a small amount of
    DNA and after each PCR cycle, the amount of DNA you have is between one
    and two times the amount at the beginning of the cycle. Thus, the amount
    of DNA you have to study increases exponentially. The fact that the PCR
    is an exponential growth process means that experimental errors will
    also grow exponentially, so you need to be very careful about what you
    do with the process.
    "A number of people have decided that it should be possible to estimate
    the amount of DNA present in a sample by using PCR. This is the
    so-called quantitative competitive PCR. The idea is to add to the sample
    to be estimated a known amount of similar but distinguishable DNA and
    amplify both together. The assumption is that the relative amounts of
    the two products should stay the same, and hence you can work out the
    size of the sample you started with by knowing the ratio of the two,
    determined by observation when PCR has produced enough of both to
    measure, and how much control DNA was added.
    "What is absolutely crucial is that the relative amounts of the test DNA
    and your known control must remain exactly equal. Close is not good
    enough. The slightest variations will be magnified exponentially and can
    produce massive errors in your estimate.
    "The difficulties in using PCR quantitatively were pointed out by Luc
    Raeymaekers in the journal Analytical Biochemistry in 1993. He noted
    published papers on QC-PCR contain data that show that the fundamental
    assumption that the relative sizes of the samples remain constant is not
    met in practice. Despite this, HIV researchers continue to use PCR to
    quantify viral load. There is simply no way of knowing whether a given
    estimate is correct or is 100,000 times too high!"
    Todd Miller calls QC-PCR the "latest fad in science" and agrees that if
    the relative amounts of your test DNA and your known control are not
    equal, there is one thing you can say for sure about the estimate of
    your starting target (the amount of proposed HIV RNA in the patient's
    blood sample): It will be wrong.
    How did QC-PCR, with all its flaws, become an acceptable HIV test?
    Miller explains: "The way this situation has manifested itself in modern
    science is like this: First some people spend a lot of time trying to
    get this test to work, and if they're lucky, end up publishing papers
    about caveats in the procedure. Second, others happen to get the test to
    give them an answer that "makes sense" and publish their data as a
    significant contribution to the field. Third, because of its relative
    newness and arcane nature, it remains as quasi-accepted with many
    passive sceptics and a few users. However, most who use it are more
    interested in their own pet phenomenon than in the mechanics of the
    reaction."
    bDNA - BRANCHED DNA PCR
    This is the test used in Ho's paper. Though it is not, strictly
    speaking, PCR, it is referred to as such since it incorporates PCR-type
    technology. The difference is that bDNA amplifies the signal, not the
    target. That is, regular PCR makes more of the target so you can find
    it, whereas bDNA sort of shines a bright spotlight on it so you can see
    it better. Project Inform was kind enough to send me the following
    explanation of how bDNA works: (9)
    "Copies of a DNA probe are attached to the wall of a small laboratory
    vessel; then the sample is put in. [A DNA probe is a small piece of DNA
    complementary to the target DNA sequence.] This probe binds to a certain
    part of HIV RNA, if it is found in the sample, holding the RNA in the
    vessel. Then another DNA probe is put in; one end of this attaches to
    another part of the HIV RNA. The other end of the second probe has many
    branches and each branch ends with a "reporter" chemical that, under
    certain conditions, will produce light, which can be detected by
    laboratory equipment. Each molecule of HIV RNA can attach to one of
    these branching structures and hold on to a small number of light
    sources, not just one. In this way, very small amounts of the target RNA
    can be detected, without the need for PCR amplification."
    In his initial paper, Ho gave no data on the protocols for this test or
    whether it was reliable. The reader was referred to two other papers
    that were "in press". So, no data was available at that time to anyone
    who wanted to verify this method. The data obtained from bDNA was
    confirmed by QC-PCR, the details of QC-PCR being set out in a reference
    authored by four co-authors of the Wei study, hardly what you might call
    independent or objective researchers. In the tradition of HIV research,
    unproven theories and faulty studies are accepted without question and
    incorporated into the "conventional wisdom" before being properly
    validated. By then, the damage is done, and if subsequent flaws are
    discovered it hardly matters.
    The mechanics of bDNA are complex: Five different hybridisation
    reactions are going on. Hybridisation is a standard technique wherein a
    DNA probe is put into a sample and will bind to any complementary
    segments it finds. It's another indirect test, and it has a lot of
    problems. According to molecular biologist Bryan Ellison, "The only time
    molecular biology works is if you purify things first. There's always
    the possibility of cross-reactions, especially when you put your probes
    into a big soup of proteins" (which is exactly what the target blood
    sample is).
    Duesberg pointed out the following: After making the appropriate
    adjustments to his calculations, Ho himself later found that more than
    10,000 viruses inferred by the bDNA assay used in his Nature paper would
    actually correspond to less than one infectious virus, leading one to
    wonder what it is that is actually being measured on these tests. (10)
    Yet these speculative and unvalidated papers have been accepted as
    gospel truth!
    In Ellison's mind, Ho's study is "Pure fantasy. There's never been a
    paper that shows viral load."
    The Problems With PCR
    1. THE ACCURACY OF PCR HAS NEVER BEEN VERIFIED BY A PROPER GOLD STANDARD
    To find out if any diagnostic test for HIV infection actually works, it
    is necessary to verify the test with an independent gold standard. The
    only proper gold standard for this purpose is HIV itself. In other
    words, the results of your experimental test, whether it's PCR or
    anything else, must be compared to the results of virus isolation in
    each sample tested. If virus is actually found in each patient with a
    positive PCR, and no virus is found in each patient with a negative PCR,
    then you could say PCR is extremely accurate for detecting HIV.
    The concept of virus isolation as a gold standard is particularly
    important in the case of HIV, since HIV has been extremely difficult, if
    not impossible, to define in genetic or molecular terms. Even if anyone
    had ever accomplished virus isolation for HIV (11), it has never been
    used as a gold standard for any HIV diagnostic test, including PCR. As
    it stands right now, bDNA uses QC-PCR as a gold standard; QC-PCR uses
    regular PCR as a gold standard; regular PCR uses antibody tests as a
    gold standard, and antibody tests use each other. I have noticed time
    after time that studies which are "verifying" an HIV antibody test will
    invariably state that they evaluated the performance of their test on
    samples which were known to be TRUE-POSITIVE or TRUE-NEGATIVE. How did
    they know this? It's simple: Without a gold standard, they didn't.
    It is sometimes argued that "studies have shown" these tests to agree
    with each other or confirm each other's findings, and therefore they
    must be correct. This is not rigorous scientific thinking. Sometimes you
    can get the results of different tests to agree with each other, but
    that does not prove anything -- no more than it would prove if five
    criminals all agreed that they were somewhere else when the bank was
    being robbed.
    Eleopulos says the following about the importance of gold standards:
    "The use of viral isolation as an independent means of establishing the
    presence or absence of the virus is technically known as a gold
    standard, and is a quintessential element for the authentication of any
    diagnostic test. Without a gold standard, the investigator is hopelessly
    disoriented, since he does not have an autonomous yardstick against
    which he can appraise the test he is aspiring to develop.... Only by
    this means can we assure patients that a positive HIV PCR is only ever
    found in the presence of HIV infection, that is, the tests are highly
    specific for HIV infection."
    Even well-known AIDS researcher William Blattner has conceded that "one
    difficulty in assaying the specificity and sensitivity of human
    retrovirus assays (including HIV) is the absence of a final 'gold
    standard.' In the absence of gold standards for both HTLV-1 and HIV-1,
    the true sensitivity and specificity for the detection of viral
    antibodies remain imprecise." (12)
    Mark Craddock states QC-PCR is unverified and probably unverifiable. He
    asks, "If PCR is the only way that the virus can be detected, then how
    do you establish the precise viral load independently of PCR, so that
    you can be certain that the figures PCR gives are correct?" All this has
    apparently been lost on AIDS researchers, as it is regularly recommended
    that PCR, particularly QC-PCR, be used as a gold standard for other HIV
    tests. (9,13)
    2. THE SPECIFICITY OF PCR HAS NEVER BEEN DETERMINED
    Specificity means how often a test will give negative results in people
    who are not infected. A test's specificity rating reveals the level of
    false-positive results to expect when using that test. Without a virus
    isolation gold standard, the true specificity will never be known. Even
    using concordance with antibody tests as a gold standard, PCR was not
    found to be very specific for HIV. (6 )
    Citing a proficiency study involving five laboratories with extensive
    PCR experience, Sloand states that the average specificity was 94.7%.
    (14) Specificity was as low as 90%. Numbers in the 90s may sound good,
    but in reality, this is not the case. The number of false-positives
    compared to true positives is dependent on the prevalence of HIV
    infection in any population being tested (15) -- the lower the
    prevalence, the more false-positives.
    Sloand comments that if the specificity levels achieved in this study
    were applied to the potential blood donor population" (blood donors now
    consisting of members of the low-prevalence general population), then
    "...for every true silent infection detected, 1800 uninfected donors
    would be classified as PCR positive and 3500 as PCR indeterminate. Thus
    PCR is clearly not suitable for routine screening of transfused blood"
    and by inference, any low-prevalence population. At a specificity of
    90%, I would say it wasn't suitable for testing any population.
    In a FAX I received from the Centers for Disease Control (CDC) in 1994
    regarding PCR, they stated that "Neither its specificity nor its
    sensitivity is known," and that "PCR is not recommended and is not
    licensed for routine diagnostic purposes." (16)
    In a nutshell, "The specificity of any form of PCR, for the HIV genome,
    has not been determined." (5)
    3. PCR PRIMERS ARE NOT SPECIFIC
    According to Eleopulos, Turner, and Papadimitriou, "The minimum
    requirement for [interpreting that a positive PCR signal, or
    hybridisation in general, proves HIV infection] is prior proof that the
    PCR primers and the hybridisation probes belong to a unique retrovirus,
    HIV, and that the PCR and hybridisation reactions are HIV-specific."
    Turner told me: "The PCR genomic arguments require isolation of HIV as
    absolutely essential. Otherwise how does anyone know the origin of the
    nucleic acid?"
    Eleopulos disputes the reality of a distinct HIV genome. Conceding its
    existence for the sake of argument, she offers the following evidence to
    demonstrate PCR is nonspecific for HIV: (17)
    * There is no way to be sure the "HIV" nucleic acid probes and PCR
    primers are specific to HIV because: most, if not all, probes used for
    hybridisation assays, including the PCR probes and primers, are obtained
    from "HIV" grown in tissue cultures using cells (called a cell line)
    taken from a patient with T4 cell leukemia, a disease which Gallo claims
    is caused by a retrovirus similar to HIV -- HTLV-I. And recently a
    retrovirus is claimed to have been isolated from a non-HIV-infected cell
    culture using another cell line. Thus the standard cell lines used to
    grow HIV have been shown to indicate other retroviruses. Since even the
    well-established method for isolating retroviruses (which to date has
    never been done for HIV) cannot distinguish one retrovirus from another,
    one cannot be confident that "HIV" nucleic acid probes and PCR primers
    are indeed specific for HIV.
    * Proposed HIV genes hybridise with the structural genes of HTLV-I and
    HTLV-II, two other human retroviruses. This means that if the probes
    find genetic material from these other retroviruses, they will stick to
    it and give a signal that they have found HIV instead. Since it is
    accepted that 10% of AIDS-diagnosed patients carry HTLV-I and that the
    normal human genome contains sequences related to HTLV-I and HTLV-II,
    this type of cross-reaction can be anticipated.
    * Normal human cells contain hundreds or thousands of retrovirus-like
    sequences, that is, small stretches of DNA that match a small part of
    the proposed genome of HIV or other retroviruses. And, since PCR often
    amplifies just a small part of the entire genome of whatever it's
    looking for, how do you know that what it finds isn't a normal cellular
    gene sequence that just happens to match part of what's proposed for
    HIV?
    * Further evidence that PCR is nonspecific is that positive PCRs can be
    obtained from cells without nucleic acids. So if there's no nucleic
    acid, there's no DNA or RNA, and if there's no DNA or RNA, there's
    certainly no HIV.
    * The chemicals used in labs in the preparation of tissue cultures
    (called buffers and reagents) may give positive PCR signals for HIV. (18
    )
    4. PCR DETECTS ONLY A SMALL FRAGMENT OF AN ENTIRE VIRUS
    PCR detects at best single genes and most often, only bits of genes. If
    PCR finds two or three genetic fragments out of a possible dozen
    complete genes, this is not proof that all the genes (the entire genome)
    are present. Part of a gene does not equal a complete virus particle.
    HIV experts admit that the majority of proposed HIV genomes are
    incomplete; they could never orchestrate the synthesis of a virus
    particle.
    Turner explains: "Even if all genomes were complete, having the plans
    doesn't mean you've built the house. You can carry a whole retroviral
    genome around inside your cells all your life without ever making a
    virus particle." These two problems make it even more uncertain what the
    significance of a positive PCR is.
    5. THE FINDING OF "HIV RNA" ON PCR DOES NOT SIGNIFY THE PRESENCE OF HIV
    These days, one keeps hearing the phrase "HIV RNA PCR." What's the
    difference between that and regular old DNA PCR? Regular PCR looks for
    the DNA version of what is often accepted to be the HIV genome; RNA PCR
    looks for the RNA version, that is, free virus that has not infected a
    cell.
    With the new notion that HIV was busily replicating by the billions, it
    was now thought necessary to find how much free virus there might be at
    any given time. Free virus would contain only RNA, so if the PCR finds a
    lot of "HIV RNA," it is believed billions of copies of free virus are
    swarming around the patient's tissues. In other words, if you find RNA,
    you've found HIV as well. Since it's believed HIV contains two strands
    of RNA, the suggested formula is: Two RNAs = one virus.
    In actuality, things are not this simple. In 1993, during the "HIV is
    hiding in the lymph nodes" phase of the viral load theory, Piatak and
    colleagues, including Shaw, admitted that in order to determine the
    quantity of HIV particles, one must have prior evidence that the RNA
    actually belongs to an HIV particle. (5) No such evidence was presented.
    No relationship has yet been established between the amount of RNA and
    the amount of particles that may or may not be present. And no one has
    established whether the RNA comes from a virus particle or from
    somewhere else. Without virus isolation, how do you know the origin of
    the nucleic acid (RNA)?
    6. CELL-FREE VIRUS IS NOT INFECTIOUS VIRUS
    Even if Ho were right about billions of cell-free HIVs being present in
    the bloodstream, free virus is by definition not infectious virus; it's
    irrelevant as a pathogen. For HIV to infect a cell, its envelope
    protein, gp120, must bind to the CD4 receptor site on the cell's
    surface. However, as far back as 1983, Gallo pointed out that "the viral
    envelope which is required for infectivity is very fragile. It tends to
    come off when the virus buds from infected cells, thus rendering the
    particles incapable of infecting new cells." Because of this, Gallo said
    "cell-to-cell contact may be required" for retroviral infection. Since
    gp120 is "crucial to HlV's ability to infect new cells," and since gp120
    is not found in the cell-free particles, even if huge amounts of free
    HIV are present in the blood, they would be non-infectious. (17)
    7. PCR IS NOT STANDARDISED OR REPRODUCIBLE
    In a recent paper, Teo and Shaunak commented on in situ PCR: "Despite
    considerable effort, the technique is still technically difficult and
    has not yet proved to be reliable or reproducible." (19)
    In a study which compared PCR results to antibody test results, PCR was
    found not to be reproducible and "False-positive and false-negative
    results were observed in all laboratories (concordance with antibody
    tests ranged from 40% to 100%)." (20)
    8. PCR IS SUSCEPTIBLE TO CROSS-CONTAMINATION
    Minute quantities of nucleic acids from prior specimens can easily
    contaminate the specimen currently being tested, giving a false-positive
    result. (21) Even microscopic bits of skin or hair from the lab
    technician can cause this problem. Many sources of cross-contamination
    exist, and it can occur "at any step in the procedure, from the point of
    collection of samples through to the final amplification..." (22)
    Other causes of false-positives are enumerated by Teo and Shaunak: "We
    have now identified a number of factors which can contribute to the poor
    amplification of the target DNA and to the generation of false-positive
    signals. These factors include the effects of fixation, reagent
    abstraction, DNA degradation, DNA end-labelling and product
    diffusion.... We believe considerable caution should be exercised in the
    interpretation of results generated using PCR in situ." (19)
    9. FALSE-POSITIVES FREQUENTLY OCCUR WITH PCR
    * A proficiency study to rate HIV PCR's performance on detecting
    cell-free DNA showed "a disturbingly high rate of nonspecific
    positivity" using the commonly employed primers (SK38/39, for the gag or
    p24 gene). In fact, similar rates of positivity were found for both
    antibody-negative and antibody-positive specimens (18% versus 26%)! (23)

    * Out of 30 uninfected children, 6 had "occasional" positive PCR
    results. (24)
    * PCR performed on uninfected infants under one year of age showed 9/113
    (9 out of 113), 15/143, 13/137, 7/87, and 1/63 infants to have positive
    PCR tests. (25)
    * Among 117 uninfected children born to HIV-infected mothers, six (5%)
    had a false-positive PCR on cord blood. (26)
    * In a PCR proficiency study, 54% of the laboratories involved had
    problems with false-positive results; 9.3% of the total uninfected
    specimens were reported as positive. (22)
    * One out of 69 antibody-negative, non-seroconverters was PCR positive.
    (27)
    * A high-risk individual was initially PCR positive but negative on
    repeat PCR testing of the same specimen by two different laboratories.
    (27)
    * The World Health Organisation's PCR working group demonstrated high
    levels of false-positive results obtained during "blind" HIV PCR
    studies. (22)
    * Sheppard et al. stated in their study: "This trial demonstrated that
    false-positive results, even with rigorous testing algorithms, occur
    with sufficient frequency among uninfected individuals to remain a
    serious problem." (28)
    * Out of 327 health care workers exposed by needlestick to HIV, 4 had
    one or more positive PCR results and 7 had indeterminate results. Later
    samples for all 11 were negative and none seroconverted or developed p24
    antigenemia, leading to the conclusion that "false-positive results
    occur even under the most stringent test conditions." (29)
    Conclusion
    Essential to Dr. Ho's theory is the idea that HIV mutates so rapidly
    that within days or weeks it has become resistant to whatever
    "antiviral" drug the patient is taking. In order to prevent this, it is
    recommended that the patient take three-drug "combos" which
    theoretically hit HIV from all angles simultaneously, thus reducing the
    chance that a resistant strain will survive. Meanwhile, one must
    continuously monitor the "viral load" with tests that cost 200 bucks a
    pop. Emphasis is placed on early intervention, that is, dose patients
    with multi-drugs the minute they sero-convert (assuming that anyone
    would know when this event took place to begin with) and keep them on
    these drugs for the rest of their lives.
    Even though no one has shown them to be accurate, viral load assays are
    being vigorously promoted as state-of-the-art necessities for PWAs, and
    it's not hard to figure out why. In the Washington Post (2-06-96), David
    Brown inadvertently revealed the reason: "Aggressive HIV treatment will
    probably be even more expensive than in the past. Measuring viral load
    will cost about $200 per test, and the new generation of HIV medicines
    will probably be at least as expensive as the ones they replace."
    U. S. News and World Report (2-12-96) was more specific, estimating the
    yearly cost of a protease inhibitor at around $6,000, and the cost of
    triple-drug combinations at up to $12,000 to $18,000. Combos of three or
    four drugs are now prescribed, where one (AZT) used to suffice. As more
    and more drugs are considered necessary to "treat" people, many of whom
    have nothing wrong with them, it is obvious what a cash cow this is
    going to be for the pharmaceutical industry.
    The viral load theory has created a new worry to produce unbearable
    stress in the lives of desperate people. It is now said that a person
    has only one shot at the new "anti-viral" drugs, chiefly the protease
    inhibitors. If you don't take them at exactly the right time, in exactly
    the right combinations or amounts, or if you foolishly take only one
    drug at a time, or lower your dose because the current dose is making
    you sick, your virus will become resistant and the drugs will never work
    on you again. And you can't just quit the drugs either, for the same
    reason, even if they are making you deathly ill.
    Every article on the subject so far has a different expert guess about
    how this whole program is supposed to work: no one knows if you can get
    cured or merely hold the line; no one knows the long-term prognosis for
    those who take this triple-toxic triple-combo. (Protease inhibitors have
    produced extreme adverse reactions in many people, so it shouldn't be
    hard to figure it out). Anyone foolish enough to sign up will become a
    test animal for people who don't know what they're doing.
    When will we stop allowing ourselves to be used as guinea pigs for
    whatever crack-brained scheme comes down the pike? When will we put a
    lock on our wallets and refuse to pay for the privilege of being
    poisoned? And when will we quit supporting the most degraded human
    beings in existence -- those who profit from the suffering of others?
    Christine Johnson is a member of MENSA and a freelance science
    journalist from Los Angeles, USA. She is the Contact person of HEAL/Los
    Angeles, is on the Board of Advisors of Continuum magazine and
    copy-editor of Reappraising AIDS. She has an extensive background in
    medicine, law and library research and is motivated by a desire to find
    out the truth about 'AIDS'. She has a special interest in making the
    information in technical science journals accessible to the public. Over
    the past four years she has followed the work of the Perth group and
    written articles critical of the HIV antibody tests, including an
    extensive interview with Eleni Papadopulos-Eleopulos, which have been
    published world-wide.
    References
    1. Embretson J, Zupancicl M, Ribas JL, et al. 1992. "Massive covert
    infection of helper T lymphocytes and macrophages by HIV during the
    incubation period of AIDS." Nature. 362:359-362.
    2. Pantaleo G, Graziosi C, Demarest J, et al. 1993. "HIV infection is
    active and progressive in lymphoid tissue during the clinically latent
    stage of disease." Nature. 362:355-358.
    3. Ho DD, Neumann AU, Perelson AS, et al. 1995. "Rapid turnover of
    plasma virions and CD4 lymphocytes in HIV-1 infection." Nature.
    373:123-126.
    4. Wei X, Ghosh SK, Taylor ME, et al. 1995. "Viral dynamics in human
    immunodeficiency virus type 1 infection." Nature. 373:117-122.
    5. Eleopulos E, Turner VF, Papadimitriou J. 1995. "Turnover of HIV-1 and
    CD4 lymphocytes." Reappraising AIDS. 3(6):2-4.
    6. Eleopulos E, Turner VF, Papadimitriou J. Letter to Nature. 1994. "Is
    HIV really hiding in the Iymph nodes?"
    7. Duesberg P, Bialy H. "Responding to 'Duesberg and the new view of
    HIV"' in AIDS: Virus- or Drug-Induced. Kluwer Academic Publishers,
    Boston (1996).
    8. Craddock M. 1995. "HIV: Science by Press Conference." Reappraising
    AIDS. 3(5):-4.
    9. Project Inform Fact Sheet: PCR Tests. August 1, 1995.
    10. Duesberg P, Bialy H. 1995. "HIV an illusion." Nature. 375:197.
    11. Papadopulos-Eleopulos E, Turner VF and Papadimitriou JM. 1993. "Is a
    positive Western Blot proof of HIV infection?" Bio/Technology.
    11:696-707.
    12. Blattner WA. 1989. Retroviruses. pp545-592. In Viral Infections in
    Humans, third edition, edited by A Evans. Plenum Medical Book Company,
    New York.
    13. Macy E, Adelman D. 1988. Letter to New England Journal of Medicine.
    December 15.
    14. Sloand E, Pitt E, Chiarello R, et al. 1991. "HIV Testing: State of
    the art." JAMA. 266:2861.
    15. Maver, Robert. April 1993. "Testing AIDS Tests." Rethinking AIDS.
    1(4):4.
    16. Centers for Disease Control Faxback document #320320, January 1993.
    17. Eleopulos E, Turner VF, Papadimitriou J, Causer D. 1995. "Factor
    Vlll, HIV, and AIDS in hemophiliacs: An analysis of their relationship."
    Genetica. 95(1-3):25-50.
    18. Conway B. 1990. "Detection of HIV-1 by PCR in Clinical Specimens,"
    p40-45, in Techniques in HIV Research, edited by A Aldovini and BD
    Walker, MacMillan, New York.
    19. Teo IA, Shaunak S. 1995. "PCR in situ: aspects which reduce
    amplification and generate false-positive results." Histochem. J.
    27:660.
    20. Defer C, Agut H, Garbarg-Chenon A, et al. 1992. "Multicentre quality
    control of polymerase chain reaction for detection of HIV DNA." AIDS.
    6:659.
    21. Bootman JS, Kitchin PA. 1994. "Reference preparations in the
    standardization of HIV-1 PCR: An international collaborative study." J.
    Vir. Meth. 49:1-8.
    22. Bootman JS, Kitchin PA. 1992. "An international collaborative study
    to assess a set of reference reagents for HIV-1 PCR." J. Vir. Meth.
    37:23.
    23. Busch MP, Henrard DR, Hewlett IK, et al. 1992. "Poor sensitivity,
    specificity, and reproducibility of detection of HIV-1 DNA in serum by
    polymerase chain reaction." J. AIDS. 5:872.
    24. Garbarg-Chenon A, Segondy M, Conge A, et al. 1993. "Virus isolation,
    polymerase chain reaction and in vitro antibody production for the
    diagnosis of pediatric human immunodeficiency virus infection." J. Vir.
    Methods. 42:117.
    25. Paui MO, Tetali S, Lesser ML, et al. 1996. "Laboratory diagnosis of
    infection status in infants perinatally exposed to human
    immunodeficiency virus type 1." J. Inf. Dis. 173:68.
    26. Simonon A, Lepage P, Karita E, et al. 1994. "An assessment of the
    timing of mother-to-child transmission of human immunodeficiency virus
    type 1 by means of polymerase chain reaction." J. AIDS. 7:952.
    27. Celum CL, Coombs RW, Lafferty W, et al. 1991. "Indeterminate human
    immunodeficiency virus type 1 Western Blots: Seroconversion risk,
    specificity of supplemental tests, and an algorithm for evaluation." J.
    Inf. Dis. 164:656.
    28. Sheppard HW, Ascher MS, Busch MP, et al. 1991. "A multicenter
    proficiency trial of gene amplification (PCR) for the detection of
    HIV-1." J. AIDS. 4:277.
    29. Gerberding JL. 1994. "Incidence and prevalence of human
    immunodeficiency virus, hepatitis B virus, hepatitis C virus, and
    cytomegalovirus among health care personnel at risk for blood exposure:
    Final report from a longitudinal study." J. Inf. Dis. 170:1410.
    With acknowledgements to: Paul Philpott, former research assistant in
    immunology and current editor of Reappraising AIDS; and Todd Miller,
    Ph.D. in biochemistry and molecular biology, of the University of Miami.
    A similar version of this piece first appeared in the HEAL/New York
    Bulletin, Oct. 1996

    VIRUSMYTH HOMEPAGE
    reading
 
Add to My Watchlist
What is My Watchlist?
A personalised tool to help users track selected stocks. Delivering real-time notifications on price updates, announcements, and performance stats on each to help make informed investment decisions.
(20min delay)
Last
2.9¢
Change
0.002(7.41%)
Mkt cap ! $49.83M
Open High Low Value Volume
2.7¢ 3.0¢ 2.6¢ $39.56K 1.411M

Buyers (Bids)

No. Vol. Price($)
2 141852 2.6¢
 

Sellers (Offers)

Price($) Vol. No.
2.9¢ 723823 2
View Market Depth
Last trade - 15.59pm 12/09/2025 (20 minute delay) ?
VHL (ASX) Chart
arrow-down-2 Created with Sketch. arrow-down-2 Created with Sketch.